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rVarBase
SNP Report
Basic Infomation
Name
rs378672  
dbSNP
Location
chr:1,200886333
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12131796
0.83[CEU][hapmap]
rs296539
0.88[EUR][1000 genomes]
rs296543
0.84[CEU][hapmap]
rs370411
0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs404339
0.84[CEU][hapmap];0.85[TSI][hapmap]
rs7522462
0.80[CEU][hapmap]
rs7554511
0.80[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
MROH3P
Proximal transcriptional regulation
MROH3P
Distal transcriptional regulation
C1orf106
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
DEPDC1
SCAN