SNP Report

Basic Infomation

Name	rs493052 dbSNP
Location	chr:11,64078380
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 58)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10128595	0.87[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10128649	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10556	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1124660	0.87[CHD][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1207462	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs1213140	0.98[ASN][1000 genomes]
rs12271952	0.88[ASN][1000 genomes]
rs12281471	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12283639	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12287065	0.95[ASN][1000 genomes]
rs12574188	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12575515	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs12575690	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12577422	0.81[ASN][1000 genomes]
rs12577425	1.00[CHB][hapmap]
rs1320688	0.94[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1468558	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17159027	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1783518	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs2079786	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2232410	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2232417	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2282548	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286612	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs2289572	0.91[ASN][1000 genomes]
rs2302262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28682946	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3759056	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41294376	0.95[ASN][1000 genomes]
rs41294424	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs474430	1.00[EUR][1000 genomes]
rs477895	1.00[LWK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs490598	0.82[ASN][1000 genomes]
rs490720	0.82[ASN][1000 genomes]
rs539008	0.82[ASN][1000 genomes]
rs569741	0.82[ASN][1000 genomes]
rs575081	0.82[ASN][1000 genomes]
rs58010797	0.81[ASN][1000 genomes]
rs58721876	0.95[ASN][1000 genomes]
rs59283629	0.95[ASN][1000 genomes]
rs60421451	0.98[ASN][1000 genomes]
rs605597	1.00[TSI][hapmap]
rs60579179	0.81[ASN][1000 genomes]
rs605827	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61431997	0.95[ASN][1000 genomes]
rs621816	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs650008	0.83[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs671976	0.86[YRI][hapmap]
rs687424	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102415	1.00[MEX][hapmap]
rs7110262	0.95[ASN][1000 genomes]
rs7118199	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7121001	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7934801	1.00[MEX][hapmap]
rs7950596	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7950922	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951858	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952435	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ESRRA	Proximal transcriptional regulation
NUDT22	Distal transcriptional regulation
DNAJC4	Distal transcriptional regulation
VEGFB	Distal transcriptional regulation
FKBP2	Distal transcriptional regulation
PPP1R14B	Distal transcriptional regulation
ENSG00000256940	Distal transcriptional regulation
ENSG00000257086	Distal transcriptional regulation
PLCB3	Distal transcriptional regulation
ESRRA	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)