SNP Report
Basic Infomation
| Name | rs671976 dbSNP |
|---|---|
| Location | chr:11,64046029 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231740 | 1.00[CEU][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1320688 | 0.86[YRI][hapmap] |
| rs2232410 | 0.86[YRI][hapmap] |
| rs477895 | 0.83[ASW][hapmap];0.93[YRI][hapmap] |
| rs493052 | 0.86[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| BAD | RNA binding protein mediated regulation |
| GPR137 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 12)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014