SNP Report
Basic Infomation
| Name | rs1320688 dbSNP |
|---|---|
| Location | chr:11,64068756 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128595 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
| rs1124660 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
| rs1207462 | 0.87[CHD][hapmap] |
| rs12575515 | 0.87[CHD][hapmap] |
| rs1468558 | 1.00[CHD][hapmap] |
| rs17159027 | 1.00[CHD][hapmap] |
| rs2079786 | 0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs2232410 | 0.94[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs2232417 | 0.86[AFR][1000 genomes] |
| rs477895 | 0.84[ASW][hapmap];0.94[LWK][hapmap];0.93[YRI][hapmap] |
| rs493052 | 0.94[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs605827 | 0.86[AFR][1000 genomes] |
| rs650008 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
| rs671976 | 0.86[YRI][hapmap] |
| rs687424 | 0.85[AFR][1000 genomes] |
| rs7118199 | 0.84[AFR][1000 genomes] |
| rs7950596 | 0.87[CHD][hapmap] |
| rs7952435 | 0.83[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ESRRA | Proximal transcriptional regulation |
| TEX40 | Proximal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| ENSG00000257069 | RNA binding protein mediated regulation |
| TEX40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014