SNP Report
Basic Infomation
| Name | rs2079786 dbSNP |
|---|---|
| Location | chr:11,64085967 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128595 | 1.00[ASW][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10128649 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10556 | 1.00[EUR][1000 genomes] |
| rs1124660 | 0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes] |
| rs1213140 | 0.84[ASN][1000 genomes] |
| rs12281471 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12283639 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12575690 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1320688 | 0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs1468558 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17159027 | 0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1783518 | 0.81[CHB][hapmap] |
| rs2232410 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2232417 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2282548 | 1.00[EUR][1000 genomes] |
| rs2286612 | 1.00[MEX][hapmap] |
| rs28682946 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3759056 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41294376 | 0.82[ASN][1000 genomes] |
| rs41294424 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs474430 | 1.00[EUR][1000 genomes] |
| rs493052 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60421451 | 0.80[ASN][1000 genomes] |
| rs605597 | 1.00[TSI][hapmap] |
| rs605827 | 0.92[ASN][1000 genomes] |
| rs621816 | 1.00[EUR][1000 genomes] |
| rs650008 | 0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs687424 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7102415 | 1.00[MEX][hapmap] |
| rs7121001 | 1.00[EUR][1000 genomes] |
| rs7934801 | 1.00[MEX][hapmap] |
| rs7950596 | 1.00[MEX][hapmap] |
| rs7950922 | 1.00[EUR][1000 genomes] |
| rs7951858 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7952435 | 0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TRMT112 | Proximal transcriptional regulation |
| SLC25A5 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| AHNAK | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014