SNP Report
Basic Infomation
| Name | rs605827 dbSNP |
|---|---|
| Location | chr:11,64070138 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128595 | 0.88[ASN][1000 genomes] |
| rs1124660 | 0.85[ASN][1000 genomes] |
| rs1213140 | 0.81[ASN][1000 genomes] |
| rs1320688 | 0.86[AFR][1000 genomes] |
| rs2079786 | 0.92[ASN][1000 genomes] |
| rs2232410 | 0.98[AFR][1000 genomes] |
| rs2232417 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28682946 | 0.88[ASN][1000 genomes] |
| rs41294424 | 0.88[ASN][1000 genomes] |
| rs477895 | 0.88[AFR][1000 genomes] |
| rs493052 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs650008 | 0.98[ASN][1000 genomes] |
| rs687424 | 0.98[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7118199 | 0.91[AFR][1000 genomes] |
| rs7952435 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ESRRA | Proximal transcriptional regulation |
| TEX40 | Proximal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| ENSG00000257069 | RNA binding protein mediated regulation |
| TEX40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014