SNP Report
Basic Infomation
| Name | rs1124660 dbSNP |
|---|---|
| Location | chr:11,64016073 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128595 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10128649 | 0.83[ASN][1000 genomes] |
| rs10556 | 0.85[ASN][1000 genomes] |
| rs12287065 | 0.85[ASN][1000 genomes] |
| rs12577425 | 0.86[CHB][hapmap] |
| rs1320688 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
| rs1468558 | 0.87[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes] |
| rs17159027 | 0.87[CHD][hapmap];0.83[ASN][1000 genomes] |
| rs2079786 | 0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes] |
| rs2232410 | 0.87[CHD][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes] |
| rs2286612 | 0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes] |
| rs2302262 | 0.85[ASN][1000 genomes] |
| rs28682946 | 0.92[ASN][1000 genomes] |
| rs41294424 | 0.92[ASN][1000 genomes] |
| rs493052 | 0.87[CHD][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs58721876 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs59283629 | 0.85[ASN][1000 genomes] |
| rs60421451 | 0.83[ASN][1000 genomes] |
| rs605827 | 0.85[ASN][1000 genomes] |
| rs61431997 | 0.85[ASN][1000 genomes] |
| rs621816 | 0.85[ASN][1000 genomes] |
| rs650008 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs687424 | 0.92[ASN][1000 genomes] |
| rs7102415 | 0.81[GIH][hapmap];1.00[MEX][hapmap] |
| rs7110262 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7934801 | 0.81[GIH][hapmap];1.00[MEX][hapmap] |
| rs7950596 | 1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap] |
| rs7951858 | 0.83[ASN][1000 genomes] |
| rs7952435 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLCB3 | Proximal transcriptional regulation |
| PPP1R14B | Proximal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014