SNP Report

Basic Infomation

Name	rs10556 dbSNP
Location	chr:11,64037407
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10128595	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10128649	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1124660	0.85[ASN][1000 genomes]
rs1207462	0.82[ASN][1000 genomes]
rs1213140	0.93[ASN][1000 genomes]
rs12271952	0.88[ASN][1000 genomes]
rs12281471	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12283639	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12287065	1.00[ASN][1000 genomes]
rs12574188	0.82[ASN][1000 genomes]
rs12575515	0.82[ASN][1000 genomes]
rs12575690	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12577422	0.80[ASN][1000 genomes]
rs1468558	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159027	0.98[ASN][1000 genomes]
rs1783518	0.80[ASN][1000 genomes]
rs2079786	1.00[EUR][1000 genomes]
rs2232410	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2232417	1.00[EUR][1000 genomes]
rs2282548	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286612	0.90[ASN][1000 genomes]
rs2289572	0.91[ASN][1000 genomes]
rs2302262	1.00[ASN][1000 genomes]
rs28682946	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3759056	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41294376	0.91[ASN][1000 genomes]
rs41294424	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs474430	1.00[EUR][1000 genomes]
rs490598	0.82[ASN][1000 genomes]
rs490720	0.82[ASN][1000 genomes]
rs493052	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs539008	0.82[ASN][1000 genomes]
rs569741	0.82[ASN][1000 genomes]
rs575081	0.82[ASN][1000 genomes]
rs58010797	0.80[ASN][1000 genomes]
rs58721876	1.00[ASN][1000 genomes]
rs59283629	1.00[ASN][1000 genomes]
rs60421451	0.98[ASN][1000 genomes]
rs60579179	0.80[ASN][1000 genomes]
rs61431997	1.00[ASN][1000 genomes]
rs621816	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650008	1.00[EUR][1000 genomes]
rs687424	1.00[EUR][1000 genomes]
rs7110262	1.00[ASN][1000 genomes]
rs7121001	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7950922	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951858	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952435	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
BAD	Proximal transcriptional regulation
GPR137	Proximal transcriptional regulation
MESDC2	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
TRMT112	Distal transcriptional regulation
PRDX5	Distal transcriptional regulation
CCDC88B	Distal transcriptional regulation
GPR137	Distal transcriptional regulation
COX8A	Distal transcriptional regulation
ENSG00000256100	Distal transcriptional regulation
BAD	Distal transcriptional regulation
KCNK4	Distal transcriptional regulation
ENSG00000207024	Distal transcriptional regulation
TEX40	Distal transcriptional regulation
MACROD1	Distal transcriptional regulation
ENSG00000257069	Distal transcriptional regulation
HSPB6	Distal transcriptional regulation
C19orf55	Distal transcriptional regulation
CBLB	Distal transcriptional regulation
BAD	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)