SNP Report

Basic Infomation

Name	rs1207462 dbSNP
Location	chr:11,64188789
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10128649	0.84[ASN][1000 genomes]
rs10556	0.82[ASN][1000 genomes]
rs10751010	1.00[MEX][hapmap]
rs10751011	1.00[MEX][hapmap]
rs1213140	0.80[ASN][1000 genomes]
rs12281471	0.89[ASN][1000 genomes]
rs12283639	0.89[ASN][1000 genomes]
rs12287065	0.82[ASN][1000 genomes]
rs12294207	1.00[MEX][hapmap]
rs12574188	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12575515	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575690	0.91[ASN][1000 genomes]
rs12577422	0.98[ASN][1000 genomes]
rs12577425	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs1320688	0.87[CHD][hapmap]
rs1468558	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs17146119	1.00[MEX][hapmap]
rs17159027	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs17159320	1.00[MEX][hapmap]
rs17159321	1.00[MEX][hapmap]
rs1783518	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2232410	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs2282548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2286612	1.00[CHB][hapmap]
rs2289572	0.91[ASN][1000 genomes]
rs2302262	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs240690	1.00[MEX][hapmap]
rs34318219	1.00[EUR][1000 genomes]
rs3759056	0.89[ASN][1000 genomes]
rs470348	1.00[MEX][hapmap]
rs470727	0.90[AMR][1000 genomes]
rs474430	0.94[ASN][1000 genomes]
rs476908	0.80[AMR][1000 genomes]
rs490598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493052	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs4963221	0.90[ASN][1000 genomes]
rs497544	1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs500273	0.80[AMR][1000 genomes]
rs519106	1.00[MEX][hapmap]
rs539008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558073	1.00[MEX][hapmap]
rs569741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58010797	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58721876	0.82[ASN][1000 genomes]
rs59283629	0.82[ASN][1000 genomes]
rs60421451	0.84[ASN][1000 genomes]
rs605597	1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs60579179	0.98[ASN][1000 genomes]
rs61431997	0.82[ASN][1000 genomes]
rs621816	0.82[ASN][1000 genomes]
rs6591855	1.00[EUR][1000 genomes]
rs7110262	0.82[ASN][1000 genomes]
rs7121001	0.98[ASN][1000 genomes]
rs7123003	1.00[MEX][hapmap]
rs71579879	1.00[EUR][1000 genomes]
rs72559736	1.00[EUR][1000 genomes]
rs73488285	1.00[EUR][1000 genomes]
rs73488288	1.00[EUR][1000 genomes]
rs73488293	1.00[EUR][1000 genomes]
rs73488297	1.00[EUR][1000 genomes]
rs73490206	1.00[EUR][1000 genomes]
rs73490261	1.00[EUR][1000 genomes]
rs7947416	1.00[EUR][1000 genomes]
rs7948607	1.00[MEX][hapmap]
rs7950922	0.89[ASN][1000 genomes]
rs7951858	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000224456	Proximal transcriptional regulation
NRXN2	Distal transcriptional regulation
ENSG00000237410	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)