SNP Report
Basic Infomation
| Name | rs12577425 dbSNP |
|---|---|
| Location | chr:11,64203856 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128649 | 0.80[ASN][1000 genomes] |
| rs1124660 | 0.86[CHB][hapmap] |
| rs1207462 | 1.00[CHB][hapmap];0.95[ASN][1000 genomes] |
| rs12281471 | 0.85[ASN][1000 genomes] |
| rs12283639 | 0.85[ASN][1000 genomes] |
| rs12574188 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12575515 | 1.00[CHB][hapmap];0.95[ASN][1000 genomes] |
| rs12575690 | 0.87[ASN][1000 genomes] |
| rs12577422 | 0.93[ASN][1000 genomes] |
| rs1468558 | 1.00[CHB][hapmap] |
| rs17159027 | 1.00[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs1783518 | 0.86[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs2232410 | 1.00[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs2282548 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs2289572 | 0.87[ASN][1000 genomes] |
| rs2302262 | 1.00[CHB][hapmap] |
| rs3759056 | 0.85[ASN][1000 genomes] |
| rs474430 | 0.89[ASN][1000 genomes] |
| rs490598 | 0.95[ASN][1000 genomes] |
| rs490720 | 0.95[ASN][1000 genomes] |
| rs493052 | 1.00[CHB][hapmap] |
| rs4963221 | 0.86[ASN][1000 genomes] |
| rs539008 | 0.95[ASN][1000 genomes] |
| rs569741 | 0.95[ASN][1000 genomes] |
| rs575081 | 0.95[ASN][1000 genomes] |
| rs58010797 | 0.93[ASN][1000 genomes] |
| rs60421451 | 0.80[ASN][1000 genomes] |
| rs60579179 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61761279 | 1.00[AMR][1000 genomes] |
| rs7121001 | 0.93[ASN][1000 genomes] |
| rs71579895 | 1.00[AMR][1000 genomes] |
| rs7950922 | 0.85[ASN][1000 genomes] |
| rs7951858 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000181908 | Distal transcriptional regulation |
| NRXN2 | Distal transcriptional regulation |
| RASGRP2 | Distal transcriptional regulation |
| PYGM | Distal transcriptional regulation |
| ENSG00000237410 | Distal transcriptional regulation |
| ENSG00000228732 | Distal transcriptional regulation |
| SLC22A12 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014