SNP Report
Basic Infomation
| Name | rs490720 dbSNP |
|---|---|
| Location | chr:11,64188654 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 54)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128649 | 0.84[ASN][1000 genomes] |
| rs10556 | 0.82[ASN][1000 genomes] |
| rs1207462 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1213140 | 0.80[ASN][1000 genomes] |
| rs12281471 | 0.89[ASN][1000 genomes] |
| rs12283639 | 0.89[ASN][1000 genomes] |
| rs12287065 | 0.82[ASN][1000 genomes] |
| rs12574188 | 1.00[ASN][1000 genomes] |
| rs12575515 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12575690 | 0.91[ASN][1000 genomes] |
| rs12577422 | 0.98[ASN][1000 genomes] |
| rs12577425 | 0.95[ASN][1000 genomes] |
| rs1468558 | 0.82[ASN][1000 genomes] |
| rs17159027 | 0.84[ASN][1000 genomes] |
| rs1783518 | 0.98[ASN][1000 genomes] |
| rs2232410 | 0.84[ASN][1000 genomes] |
| rs2282548 | 0.89[ASN][1000 genomes] |
| rs2289572 | 0.91[ASN][1000 genomes] |
| rs2302262 | 0.82[ASN][1000 genomes] |
| rs34318219 | 1.00[EUR][1000 genomes] |
| rs3759056 | 0.89[ASN][1000 genomes] |
| rs470727 | 0.90[AMR][1000 genomes] |
| rs474430 | 0.94[ASN][1000 genomes] |
| rs476908 | 0.80[AMR][1000 genomes] |
| rs490598 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs493052 | 0.82[ASN][1000 genomes] |
| rs4963221 | 0.90[ASN][1000 genomes] |
| rs497544 | 0.91[AMR][1000 genomes] |
| rs500273 | 0.80[AMR][1000 genomes] |
| rs539008 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs569741 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs575081 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58010797 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs58721876 | 0.82[ASN][1000 genomes] |
| rs59283629 | 0.82[ASN][1000 genomes] |
| rs60421451 | 0.84[ASN][1000 genomes] |
| rs605597 | 0.80[AMR][1000 genomes] |
| rs60579179 | 0.98[ASN][1000 genomes] |
| rs61431997 | 0.82[ASN][1000 genomes] |
| rs621816 | 0.82[ASN][1000 genomes] |
| rs6591855 | 1.00[EUR][1000 genomes] |
| rs7110262 | 0.82[ASN][1000 genomes] |
| rs7121001 | 0.98[ASN][1000 genomes] |
| rs71579879 | 1.00[EUR][1000 genomes] |
| rs72559736 | 1.00[EUR][1000 genomes] |
| rs73488285 | 1.00[EUR][1000 genomes] |
| rs73488288 | 1.00[EUR][1000 genomes] |
| rs73488293 | 1.00[EUR][1000 genomes] |
| rs73488297 | 1.00[EUR][1000 genomes] |
| rs73490206 | 1.00[EUR][1000 genomes] |
| rs73490261 | 1.00[EUR][1000 genomes] |
| rs7947416 | 1.00[EUR][1000 genomes] |
| rs7950922 | 0.89[ASN][1000 genomes] |
| rs7951858 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000224456 | Proximal transcriptional regulation |
| NRXN2 | Distal transcriptional regulation |
| ENSG00000237410 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014