SNP Report
Basic Infomation
| Name | rs73488288 dbSNP |
|---|---|
| Location | chr:11,64245961 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1207462 | 1.00[EUR][1000 genomes] |
| rs12575515 | 1.00[EUR][1000 genomes] |
| rs34318219 | 1.00[EUR][1000 genomes] |
| rs490598 | 1.00[EUR][1000 genomes] |
| rs490720 | 1.00[EUR][1000 genomes] |
| rs539008 | 1.00[EUR][1000 genomes] |
| rs569741 | 1.00[EUR][1000 genomes] |
| rs575081 | 1.00[EUR][1000 genomes] |
| rs58010797 | 1.00[EUR][1000 genomes] |
| rs6591855 | 1.00[EUR][1000 genomes] |
| rs7115265 | 1.00[EUR][1000 genomes] |
| rs71579879 | 1.00[EUR][1000 genomes] |
| rs72559736 | 1.00[EUR][1000 genomes] |
| rs73488285 | 1.00[EUR][1000 genomes] |
| rs73488290 | 0.88[AFR][1000 genomes] |
| rs73488293 | 1.00[EUR][1000 genomes] |
| rs73488297 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73490206 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73490261 | 1.00[EUR][1000 genomes] |
| rs7947416 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228732 | Distal transcriptional regulation |
| NRXN2 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014