SNP Report
Basic Infomation
| Name | rs12283639 dbSNP |
|---|---|
| Location | chr:11,64114731 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128595 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10128649 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10556 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1207462 | 0.89[ASN][1000 genomes] |
| rs1213140 | 0.91[ASN][1000 genomes] |
| rs12271952 | 0.86[ASN][1000 genomes] |
| rs12281471 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12287065 | 0.93[ASN][1000 genomes] |
| rs12574188 | 0.89[ASN][1000 genomes] |
| rs12575515 | 0.89[ASN][1000 genomes] |
| rs12575690 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12577422 | 0.87[ASN][1000 genomes] |
| rs12577425 | 0.85[ASN][1000 genomes] |
| rs1468558 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17159027 | 1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1783518 | 0.87[ASN][1000 genomes] |
| rs2079786 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2232410 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2232417 | 1.00[EUR][1000 genomes] |
| rs2282548 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2286612 | 0.84[ASN][1000 genomes] |
| rs2289572 | 0.98[ASN][1000 genomes] |
| rs2302262 | 0.93[ASN][1000 genomes] |
| rs28682946 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3759056 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41294376 | 0.89[ASN][1000 genomes] |
| rs41294424 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs474430 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs490598 | 0.89[ASN][1000 genomes] |
| rs490720 | 0.89[ASN][1000 genomes] |
| rs493052 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs539008 | 0.89[ASN][1000 genomes] |
| rs569741 | 0.89[ASN][1000 genomes] |
| rs575081 | 0.89[ASN][1000 genomes] |
| rs58010797 | 0.87[ASN][1000 genomes] |
| rs58721876 | 0.93[ASN][1000 genomes] |
| rs59283629 | 0.93[ASN][1000 genomes] |
| rs60421451 | 0.95[ASN][1000 genomes] |
| rs60579179 | 0.87[ASN][1000 genomes] |
| rs61431997 | 0.93[ASN][1000 genomes] |
| rs621816 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs650008 | 1.00[EUR][1000 genomes] |
| rs687424 | 1.00[EUR][1000 genomes] |
| rs7110262 | 0.93[ASN][1000 genomes] |
| rs7121001 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7950922 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7951858 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7952435 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC88B | Proximal transcriptional regulation |
| MIR17HG | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| CCDC88B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014