SNP Report

Basic Infomation

Name	rs2286612 dbSNP
Location	chr:11,63994230
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10128649	0.88[ASN][1000 genomes]
rs10556	0.90[ASN][1000 genomes]
rs10897477	0.94[AFR][1000 genomes]
rs11231700	1.00[CEU][hapmap]
rs11231706	1.00[CEU][hapmap]
rs1124660	0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs1207462	1.00[CHB][hapmap]
rs1213140	0.84[ASN][1000 genomes]
rs12281471	0.84[ASN][1000 genomes]
rs12283639	0.84[ASN][1000 genomes]
rs12283842	0.87[AFR][1000 genomes]
rs12287065	0.90[ASN][1000 genomes]
rs12574188	1.00[CHB][hapmap]
rs12575515	1.00[CHB][hapmap]
rs12575690	0.82[ASN][1000 genomes]
rs1468558	1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs17158870	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs17159027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1783518	0.89[CHB][hapmap]
rs2079786	1.00[MEX][hapmap]
rs2232410	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs2282548	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2289572	0.82[ASN][1000 genomes]
rs2302262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3751120	0.81[GIH][hapmap]
rs3759056	0.84[ASN][1000 genomes]
rs41294376	0.82[ASN][1000 genomes]
rs493052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs58009222	0.83[ASN][1000 genomes]
rs58694215	0.83[ASN][1000 genomes]
rs58721876	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58747362	0.86[ASN][1000 genomes]
rs59283629	0.90[ASN][1000 genomes]
rs59747132	0.83[ASN][1000 genomes]
rs60095771	0.83[ASN][1000 genomes]
rs60421451	0.88[ASN][1000 genomes]
rs60571265	0.81[ASN][1000 genomes]
rs61143549	0.83[ASN][1000 genomes]
rs61431997	0.90[ASN][1000 genomes]
rs61629200	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs621816	0.90[ASN][1000 genomes]
rs7102415	0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7110262	0.90[ASN][1000 genomes]
rs7123004	0.91[AFR][1000 genomes]
rs7934801	0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7950596	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7950922	0.84[ASN][1000 genomes]
rs7951858	0.88[ASN][1000 genomes]
rs7952435	1.00[JPT][hapmap];1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
DNAJC4	Proximal transcriptional regulation
TRPT1	Proximal transcriptional regulation
NUDT22	Proximal transcriptional regulation
GPRC5A	Distal transcriptional regulation
ANXA2	Distal transcriptional regulation
ZNF668	Distal transcriptional regulation
MAFG	Distal transcriptional regulation
APTX	Distal transcriptional regulation
C11orf84	Distal transcriptional regulation
GPR137	Distal transcriptional regulation
BAD	Distal transcriptional regulation
ENSG00000207024	Distal transcriptional regulation
MACROD1	Distal transcriptional regulation
STIP1	Distal transcriptional regulation
TEX40	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
NUDT22	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)