SNP Report
Basic Infomation
| Name | rs61629200 dbSNP |
|---|---|
| Location | chr:11,63967287 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897477 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11231706 | 0.87[EUR][1000 genomes] |
| rs12283842 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17158870 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2286612 | 0.92[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs57052719 | 0.83[ASN][1000 genomes] |
| rs58009222 | 0.88[ASN][1000 genomes] |
| rs58694215 | 0.88[ASN][1000 genomes] |
| rs58747362 | 1.00[ASN][1000 genomes] |
| rs59747132 | 0.88[ASN][1000 genomes] |
| rs60095771 | 0.88[ASN][1000 genomes] |
| rs60571265 | 0.86[ASN][1000 genomes] |
| rs61143549 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7102415 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7123004 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7934801 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7950596 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STIP1 | Proximal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014