SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11231706	0.86[EUR][1000 genomes]
rs12283842	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158870	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2286612	0.94[AFR][1000 genomes]
rs58721876	0.82[AFR][1000 genomes]
rs61629200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102415	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7123004	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934801	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7950596	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DNAJC4	Proximal transcriptional regulation
TRPT1	Proximal transcriptional regulation
NUDT22	Proximal transcriptional regulation
MAGI3	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
MGRN1	Distal transcriptional regulation
GPR137	Distal transcriptional regulation
BAD	Distal transcriptional regulation
STIP1	Distal transcriptional regulation
TEX40	Distal transcriptional regulation
ENSG00000207024	Distal transcriptional regulation
KCNK4	Distal transcriptional regulation
TRPT1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)