SNP Report
Basic Infomation
| Name | rs650008 dbSNP |
|---|---|
| Location | chr:11,64082437 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128595 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10128649 | 1.00[EUR][1000 genomes] |
| rs10556 | 1.00[EUR][1000 genomes] |
| rs1124660 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12281471 | 1.00[EUR][1000 genomes] |
| rs12283639 | 1.00[EUR][1000 genomes] |
| rs12575690 | 1.00[EUR][1000 genomes] |
| rs1320688 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
| rs1468558 | 1.00[EUR][1000 genomes] |
| rs2079786 | 0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2232410 | 0.83[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs2232417 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2282548 | 1.00[EUR][1000 genomes] |
| rs28682946 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3759056 | 1.00[EUR][1000 genomes] |
| rs41294424 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs474430 | 1.00[EUR][1000 genomes] |
| rs493052 | 0.83[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs605827 | 0.98[ASN][1000 genomes] |
| rs621816 | 1.00[EUR][1000 genomes] |
| rs687424 | 1.00[EUR][1000 genomes] |
| rs7121001 | 1.00[EUR][1000 genomes] |
| rs7950922 | 1.00[EUR][1000 genomes] |
| rs7951858 | 1.00[EUR][1000 genomes] |
| rs7952435 | 0.83[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRDX5 | Proximal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| ESRRA | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014