SNP Report
Basic Infomation
| Name | rs240690 dbSNP |
|---|---|
| Location | chr:11,64238023 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751010 | 1.00[MEX][hapmap] |
| rs10751011 | 1.00[MEX][hapmap] |
| rs1207462 | 1.00[MEX][hapmap] |
| rs1212851 | 1.00[MEX][hapmap] |
| rs12294207 | 1.00[MEX][hapmap] |
| rs171283 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17146119 | 1.00[MEX][hapmap] |
| rs17159320 | 1.00[MEX][hapmap] |
| rs17159321 | 1.00[MEX][hapmap] |
| rs240688 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs240689 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs240697 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs470348 | 1.00[MEX][hapmap] |
| rs497544 | 1.00[MEX][hapmap] |
| rs512926 | 1.00[MEX][hapmap] |
| rs519106 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs558073 | 1.00[MEX][hapmap] |
| rs605597 | 1.00[MEX][hapmap] |
| rs7123003 | 1.00[MEX][hapmap] |
| rs7948607 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228732 | Distal transcriptional regulation |
| NRXN2 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014