SNP Report

Basic Infomation

Name	rs512926 dbSNP
Location	chr:11,64437375
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 67)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10466694	1.00[EUR][1000 genomes]
rs10751010	1.00[MEX][hapmap]
rs10751011	1.00[MEX][hapmap]
rs11231806	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11231865	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11231866	1.00[EUR][1000 genomes]
rs11231892	1.00[MEX][hapmap]
rs11821081	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1212539	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs1212851	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs12273948	1.00[EUR][1000 genomes]
rs12280878	1.00[TSI][hapmap]
rs12293573	1.00[EUR][1000 genomes]
rs12294207	1.00[MEX][hapmap]
rs17146100	1.00[EUR][1000 genomes]
rs17146119	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs17159320	1.00[MEX][hapmap]
rs17159321	1.00[MEX][hapmap]
rs1787671	1.00[EUR][1000 genomes]
rs2022048	1.00[TSI][hapmap]
rs2022049	1.00[EUR][1000 genomes]
rs240690	1.00[MEX][hapmap]
rs2518908	1.00[EUR][1000 genomes]
rs2666561	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2666562	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs2904961	1.00[EUR][1000 genomes]
rs2959651	1.00[EUR][1000 genomes]
rs3016758	1.00[EUR][1000 genomes]
rs3016759	0.92[YRI][hapmap]
rs41323046	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs475704	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs516041	1.00[EUR][1000 genomes]
rs519106	1.00[MEX][hapmap]
rs534052	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs534073	1.00[EUR][1000 genomes]
rs535606	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs541305	1.00[EUR][1000 genomes]
rs545167	1.00[EUR][1000 genomes]
rs545819	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs546323	1.00[EUR][1000 genomes]
rs547280	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs550930	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs553618	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs559095	1.00[EUR][1000 genomes]
rs559977	1.00[EUR][1000 genomes]
rs56186064	1.00[EUR][1000 genomes]
rs565688	1.00[EUR][1000 genomes]
rs573545	0.91[ASW][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs57371796	1.00[EUR][1000 genomes]
rs579175	1.00[EUR][1000 genomes]
rs58571986	1.00[EUR][1000 genomes]
rs6591863	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7110778	1.00[EUR][1000 genomes]
rs7113097	1.00[EUR][1000 genomes]
rs7123003	1.00[MEX][hapmap]
rs7127435	1.00[EUR][1000 genomes]
rs73492139	1.00[EUR][1000 genomes]
rs73492140	1.00[EUR][1000 genomes]
rs73492144	1.00[EUR][1000 genomes]
rs73494206	1.00[EUR][1000 genomes]
rs7927181	1.00[TSI][hapmap]
rs7948607	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs7948832	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9326433	1.00[EUR][1000 genomes]
rs9326434	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9666331	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9666856	1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
NRXN2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)