SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10751010	1.00[MEX][hapmap]
rs10751011	1.00[MEX][hapmap]
rs11231865	1.00[MEX][hapmap]
rs11821081	1.00[MEX][hapmap]
rs1207462	1.00[MEX][hapmap]
rs1212851	1.00[MEX][hapmap]
rs12272267	0.85[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12287654	0.85[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294207	0.87[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146119	1.00[MEX][hapmap]
rs17159320	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs240690	1.00[MEX][hapmap]
rs2666561	1.00[MEX][hapmap]
rs470348	1.00[MEX][hapmap]
rs475704	1.00[MEX][hapmap]
rs497544	1.00[MEX][hapmap]
rs512926	1.00[MEX][hapmap]
rs519106	1.00[MEX][hapmap]
rs534052	1.00[MEX][hapmap]
rs535606	1.00[MEX][hapmap]
rs545819	1.00[MEX][hapmap]
rs547280	1.00[MEX][hapmap]
rs550930	1.00[MEX][hapmap]
rs553618	1.00[MEX][hapmap]
rs558073	1.00[MEX][hapmap]
rs605597	1.00[MEX][hapmap]
rs7123003	1.00[MEX][hapmap]
rs7948607	1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
SLC22A11	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)