SNP Report
Basic Infomation
| Name | rs547280 dbSNP |
|---|---|
| Location | chr:11,64507680 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231865 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs11231892 | 1.00[MEX][hapmap] |
| rs11821081 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs1212851 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs12280878 | 1.00[TSI][hapmap] |
| rs12294207 | 1.00[MEX][hapmap] |
| rs17146119 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs17159320 | 1.00[MEX][hapmap] |
| rs17159321 | 1.00[MEX][hapmap] |
| rs2022048 | 1.00[TSI][hapmap] |
| rs2666561 | 0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap] |
| rs41323046 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs475704 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs512926 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs516041 | 0.96[YRI][hapmap] |
| rs534052 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs535606 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs545819 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs546323 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs550930 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs553618 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap] |
| rs559977 | 0.96[YRI][hapmap] |
| rs573545 | 1.00[TSI][hapmap] |
| rs6591863 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs7927181 | 1.00[TSI][hapmap] |
| rs7948607 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs7948832 | 1.00[TSI][hapmap] |
| rs9326434 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs9666331 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RASGRP2 | Proximal transcriptional regulation |
| RASGRP2 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| NRXN2 | Distal transcriptional regulation |
| RASGRP2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SF1 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014