SNP Report
Basic Infomation
| Name | rs6591863 dbSNP |
|---|---|
| Location | chr:11,64544457 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 56)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10466694 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231806 | 1.00[EUR][1000 genomes] |
| rs11231865 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs11231866 | 1.00[EUR][1000 genomes] |
| rs11231892 | 1.00[MEX][hapmap] |
| rs11821081 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1212539 | 1.00[EUR][1000 genomes] |
| rs1212851 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs12273948 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12280878 | 1.00[TSI][hapmap] |
| rs12293573 | 1.00[EUR][1000 genomes] |
| rs17146100 | 1.00[EUR][1000 genomes] |
| rs17146119 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs1787671 | 1.00[EUR][1000 genomes] |
| rs2022048 | 1.00[TSI][hapmap] |
| rs2022049 | 1.00[EUR][1000 genomes] |
| rs2518908 | 1.00[EUR][1000 genomes] |
| rs2666561 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs2666562 | 1.00[EUR][1000 genomes] |
| rs2904961 | 1.00[EUR][1000 genomes] |
| rs2959651 | 1.00[EUR][1000 genomes] |
| rs3016758 | 1.00[EUR][1000 genomes] |
| rs41323046 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs475704 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs512926 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs516041 | 1.00[EUR][1000 genomes] |
| rs534052 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs534073 | 1.00[EUR][1000 genomes] |
| rs535606 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs541305 | 1.00[EUR][1000 genomes] |
| rs545167 | 1.00[EUR][1000 genomes] |
| rs545819 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs546323 | 1.00[EUR][1000 genomes] |
| rs547280 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs550930 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs553618 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs559095 | 1.00[EUR][1000 genomes] |
| rs559977 | 1.00[EUR][1000 genomes] |
| rs56186064 | 1.00[EUR][1000 genomes] |
| rs565688 | 1.00[EUR][1000 genomes] |
| rs573545 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs579175 | 1.00[EUR][1000 genomes] |
| rs58571986 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7110778 | 1.00[EUR][1000 genomes] |
| rs7113097 | 1.00[EUR][1000 genomes] |
| rs7127435 | 1.00[EUR][1000 genomes] |
| rs73492139 | 1.00[EUR][1000 genomes] |
| rs73492140 | 1.00[EUR][1000 genomes] |
| rs73492144 | 1.00[EUR][1000 genomes] |
| rs73494206 | 1.00[EUR][1000 genomes] |
| rs7927181 | 1.00[TSI][hapmap] |
| rs7948607 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs7948832 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs9326433 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9326434 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9666331 | 0.89[ASW][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000269038 | Proximal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| ENSG00000203400 | Distal transcriptional regulation |
| ENSG00000267804 | Distal transcriptional regulation |
| MIR192 | Distal transcriptional regulation |
| MIR194-2 | Distal transcriptional regulation |
| MEN1 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| RASGRP2 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| MRPL11 | Distal transcriptional regulation |
| PELI3 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| PYGM | Distal transcriptional regulation |
| SF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014