SNP Report

Basic Infomation

Name	rs17146119 dbSNP
Location	chr:11,64373899
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10751010	1.00[MEX][hapmap]
rs10751011	1.00[MEX][hapmap]
rs11231806	1.00[TSI][hapmap]
rs11231865	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11821081	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1207462	1.00[MEX][hapmap]
rs1212539	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1212851	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12280878	1.00[TSI][hapmap]
rs12294207	1.00[MEX][hapmap]
rs17146100	0.92[AFR][1000 genomes]
rs17159320	1.00[MEX][hapmap]
rs17159321	1.00[MEX][hapmap]
rs2022048	1.00[TSI][hapmap]
rs240690	1.00[MEX][hapmap]
rs2666561	1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs2666562	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs3016758	0.90[AFR][1000 genomes]
rs3016759	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs41323046	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs470348	1.00[MEX][hapmap]
rs475704	0.90[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs497544	1.00[MEX][hapmap]
rs512926	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs519106	1.00[MEX][hapmap]
rs534052	0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs534073	0.84[AFR][1000 genomes]
rs534221	0.82[MKK][hapmap]
rs535606	0.90[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs541305	0.84[AFR][1000 genomes]
rs545819	0.90[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs547280	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs550930	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs553618	1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs558073	1.00[MEX][hapmap]
rs573545	0.90[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs605597	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6591863	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7123003	1.00[MEX][hapmap]
rs73492134	0.92[AFR][1000 genomes]
rs73492139	0.90[AFR][1000 genomes]
rs73492140	0.90[AFR][1000 genomes]
rs73492144	0.92[AFR][1000 genomes]
rs7927181	1.00[TSI][hapmap]
rs7948607	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9326434	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9666331	1.00[MEX][hapmap];1.00[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
NRXN2	Proximal transcriptional regulation
NRXN2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)