SNP Report
Basic Infomation
| Name | rs7927181 dbSNP |
|---|---|
| Location | chr:11,64442398 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231806 | 1.00[TSI][hapmap] |
| rs11231863 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231865 | 1.00[TSI][hapmap] |
| rs11821081 | 1.00[TSI][hapmap] |
| rs1212851 | 1.00[TSI][hapmap] |
| rs12269866 | 1.00[EUR][1000 genomes] |
| rs12271728 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12278771 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12280878 | 1.00[ASW][hapmap];0.86[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12285502 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17146119 | 1.00[TSI][hapmap] |
| rs17146417 | 1.00[EUR][1000 genomes] |
| rs2022048 | 1.00[TSI][hapmap] |
| rs2666561 | 1.00[TSI][hapmap] |
| rs41323046 | 1.00[TSI][hapmap] |
| rs475704 | 1.00[TSI][hapmap] |
| rs512926 | 1.00[TSI][hapmap] |
| rs534052 | 1.00[TSI][hapmap] |
| rs535606 | 1.00[TSI][hapmap] |
| rs545819 | 1.00[TSI][hapmap] |
| rs547280 | 1.00[TSI][hapmap] |
| rs550930 | 1.00[TSI][hapmap] |
| rs553618 | 1.00[TSI][hapmap] |
| rs573545 | 1.00[TSI][hapmap] |
| rs6591863 | 1.00[TSI][hapmap] |
| rs7127422 | 1.00[ASW][hapmap];0.85[YRI][hapmap] |
| rs71526475 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71579856 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71579878 | 1.00[EUR][1000 genomes] |
| rs71579896 | 1.00[AMR][1000 genomes] |
| rs71581770 | 1.00[EUR][1000 genomes] |
| rs71581787 | 1.00[EUR][1000 genomes] |
| rs71583703 | 1.00[EUR][1000 genomes] |
| rs7948607 | 1.00[TSI][hapmap] |
| rs7948832 | 1.00[TSI][hapmap] |
| rs9326434 | 1.00[TSI][hapmap] |
| rs9666331 | 1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NRXN2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014