SNP Report
Basic Infomation
| Name | rs17146417 dbSNP |
|---|---|
| Location | chr:11,64644765 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231863 | 1.00[EUR][1000 genomes] |
| rs12271728 | 1.00[EUR][1000 genomes] |
| rs12278771 | 1.00[EUR][1000 genomes] |
| rs12280878 | 1.00[EUR][1000 genomes] |
| rs12285502 | 1.00[EUR][1000 genomes] |
| rs2959658 | 1.00[AMR][1000 genomes] |
| rs7127422 | 1.00[AMR][1000 genomes] |
| rs71526475 | 1.00[EUR][1000 genomes] |
| rs71579856 | 1.00[EUR][1000 genomes] |
| rs71579878 | 1.00[EUR][1000 genomes] |
| rs71581787 | 1.00[EUR][1000 genomes] |
| rs71583703 | 1.00[EUR][1000 genomes] |
| rs7927181 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EHD1 | Proximal transcriptional regulation |
| ENSG00000230835 | Proximal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| MEN1 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| BATF2 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| NRXN2 | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| EHD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014