SNP Report
Basic Infomation
| Name | rs71526475 dbSNP |
|---|---|
| Location | chr:11,64404817 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10219174 | 1.00[EUR][1000 genomes] |
| rs11231863 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11823402 | 1.00[EUR][1000 genomes] |
| rs12269866 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12271728 | 1.00[EUR][1000 genomes] |
| rs12275514 | 1.00[EUR][1000 genomes] |
| rs12278771 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12280878 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12285502 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17146417 | 1.00[EUR][1000 genomes] |
| rs558073 | 1.00[EUR][1000 genomes] |
| rs56768513 | 1.00[EUR][1000 genomes] |
| rs71579856 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71579878 | 1.00[EUR][1000 genomes] |
| rs71579896 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs71581770 | 1.00[EUR][1000 genomes] |
| rs71581787 | 1.00[EUR][1000 genomes] |
| rs71583703 | 1.00[EUR][1000 genomes] |
| rs7927181 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000224456 | Distal transcriptional regulation |
| ENSG00000231492 | Distal transcriptional regulation |
| NRXN2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014