SNP Report
Basic Infomation
| Name | rs558073 dbSNP |
|---|---|
| Location | chr:11,64202427 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10219174 | 1.00[EUR][1000 genomes] |
| rs10751010 | 1.00[MEX][hapmap] |
| rs10751011 | 1.00[MEX][hapmap] |
| rs11823402 | 1.00[EUR][1000 genomes] |
| rs1207462 | 1.00[MEX][hapmap] |
| rs1212851 | 1.00[MEX][hapmap] |
| rs12269866 | 1.00[EUR][1000 genomes] |
| rs12271728 | 1.00[EUR][1000 genomes] |
| rs12275514 | 1.00[EUR][1000 genomes] |
| rs12278771 | 1.00[EUR][1000 genomes] |
| rs12294207 | 1.00[MEX][hapmap] |
| rs17146119 | 1.00[MEX][hapmap] |
| rs17159320 | 1.00[MEX][hapmap] |
| rs17159321 | 1.00[MEX][hapmap] |
| rs240690 | 1.00[MEX][hapmap] |
| rs470348 | 1.00[MEX][hapmap] |
| rs470727 | 0.81[YRI][hapmap] |
| rs476908 | 1.00[YRI][hapmap];0.90[AMR][1000 genomes] |
| rs497544 | 1.00[MEX][hapmap] |
| rs500273 | 1.00[YRI][hapmap];0.90[AMR][1000 genomes] |
| rs519106 | 1.00[MEX][hapmap] |
| rs56768513 | 1.00[EUR][1000 genomes] |
| rs605597 | 1.00[MEX][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes] |
| rs7123003 | 1.00[MEX][hapmap] |
| rs71526475 | 1.00[EUR][1000 genomes] |
| rs71579878 | 1.00[EUR][1000 genomes] |
| rs71581770 | 1.00[EUR][1000 genomes] |
| rs7948607 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000181908 | Distal transcriptional regulation |
| NRXN2 | Distal transcriptional regulation |
| RASGRP2 | Distal transcriptional regulation |
| PYGM | Distal transcriptional regulation |
| ENSG00000237410 | Distal transcriptional regulation |
| ENSG00000228732 | Distal transcriptional regulation |
| SLC22A12 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SLC2A4RG | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014