SNP Report
Basic Infomation
| Name | rs12294207 dbSNP |
|---|---|
| Location | chr:11,64338586 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751010 | 1.00[MEX][hapmap] |
| rs10751011 | 1.00[MEX][hapmap] |
| rs11231865 | 1.00[MEX][hapmap] |
| rs11821081 | 1.00[MEX][hapmap] |
| rs1207462 | 1.00[MEX][hapmap] |
| rs1212851 | 1.00[MEX][hapmap] |
| rs12272267 | 0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12287654 | 0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17146119 | 1.00[MEX][hapmap] |
| rs17159320 | 0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17159321 | 0.87[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs240690 | 1.00[MEX][hapmap] |
| rs2666561 | 1.00[MEX][hapmap] |
| rs470348 | 1.00[MEX][hapmap] |
| rs475704 | 1.00[MEX][hapmap] |
| rs497544 | 1.00[MEX][hapmap] |
| rs512926 | 1.00[MEX][hapmap] |
| rs519106 | 1.00[MEX][hapmap] |
| rs534052 | 1.00[MEX][hapmap] |
| rs535606 | 1.00[MEX][hapmap] |
| rs545819 | 1.00[MEX][hapmap] |
| rs547280 | 1.00[MEX][hapmap] |
| rs550930 | 1.00[MEX][hapmap] |
| rs553618 | 1.00[MEX][hapmap] |
| rs558073 | 1.00[MEX][hapmap] |
| rs605597 | 1.00[MEX][hapmap] |
| rs7123003 | 1.00[MEX][hapmap] |
| rs7948607 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A11 | Proximal transcriptional regulation |
| SLC22A11 | Distal transcriptional regulation |
| SLC22A11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014