SNP Report
Basic Infomation
| Name | rs11231892 dbSNP |
|---|---|
| Location | chr:11,64620880 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897531 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231865 | 1.00[MEX][hapmap] |
| rs11231888 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231897 | 1.00[AMR][1000 genomes] |
| rs11821081 | 1.00[MEX][hapmap] |
| rs11824823 | 1.00[EUR][1000 genomes] |
| rs11825104 | 1.00[EUR][1000 genomes] |
| rs2666561 | 1.00[MEX][hapmap] |
| rs35197993 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41323046 | 1.00[MEX][hapmap] |
| rs475704 | 1.00[MEX][hapmap] |
| rs512926 | 1.00[MEX][hapmap] |
| rs534052 | 1.00[MEX][hapmap] |
| rs535606 | 1.00[MEX][hapmap] |
| rs545819 | 1.00[MEX][hapmap] |
| rs547280 | 1.00[MEX][hapmap] |
| rs550930 | 1.00[MEX][hapmap] |
| rs553618 | 1.00[MEX][hapmap] |
| rs57292990 | 1.00[EUR][1000 genomes] |
| rs57983247 | 1.00[EUR][1000 genomes] |
| rs58009266 | 1.00[EUR][1000 genomes] |
| rs60568743 | 1.00[EUR][1000 genomes] |
| rs61746813 | 1.00[EUR][1000 genomes] |
| rs6591863 | 1.00[MEX][hapmap] |
| rs6591868 | 1.00[MEX][hapmap] |
| rs73474770 | 1.00[EUR][1000 genomes] |
| rs73474771 | 1.00[EUR][1000 genomes] |
| rs73474781 | 1.00[EUR][1000 genomes] |
| rs73477004 | 1.00[EUR][1000 genomes] |
| rs73477025 | 1.00[EUR][1000 genomes] |
| rs73477027 | 1.00[EUR][1000 genomes] |
| rs73479135 | 1.00[EUR][1000 genomes] |
| rs73481122 | 1.00[EUR][1000 genomes] |
| rs73481154 | 1.00[EUR][1000 genomes] |
| rs73494264 | 1.00[EUR][1000 genomes] |
| rs73494273 | 1.00[EUR][1000 genomes] |
| rs73495050 | 1.00[EUR][1000 genomes] |
| rs73496391 | 1.00[EUR][1000 genomes] |
| rs916606 | 0.91[YRI][hapmap] |
| rs9326434 | 1.00[MEX][hapmap] |
| rs9666331 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EHD1 | Proximal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| ENSG00000267804 | Distal transcriptional regulation |
| MIR192 | Distal transcriptional regulation |
| MIR194-2 | Distal transcriptional regulation |
| EHD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014