SNP Report
Basic Infomation
| Name | rs11824823 dbSNP |
|---|---|
| Location | chr:11,64665948 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897531 | 1.00[EUR][1000 genomes] |
| rs11231888 | 1.00[EUR][1000 genomes] |
| rs11231892 | 1.00[EUR][1000 genomes] |
| rs11825104 | 1.00[EUR][1000 genomes] |
| rs17146681 | 1.00[EUR][1000 genomes] |
| rs35197993 | 1.00[EUR][1000 genomes] |
| rs57292990 | 1.00[EUR][1000 genomes] |
| rs57895567 | 1.00[EUR][1000 genomes] |
| rs57983247 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58009266 | 1.00[EUR][1000 genomes] |
| rs58306239 | 1.00[EUR][1000 genomes] |
| rs60568743 | 1.00[EUR][1000 genomes] |
| rs61136517 | 1.00[EUR][1000 genomes] |
| rs61746813 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73474770 | 1.00[EUR][1000 genomes] |
| rs73474771 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73474781 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73477004 | 1.00[EUR][1000 genomes] |
| rs73477025 | 1.00[EUR][1000 genomes] |
| rs73477027 | 1.00[EUR][1000 genomes] |
| rs73477209 | 1.00[EUR][1000 genomes] |
| rs73479135 | 1.00[EUR][1000 genomes] |
| rs73481122 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73481154 | 1.00[EUR][1000 genomes] |
| rs73494264 | 1.00[EUR][1000 genomes] |
| rs73494273 | 1.00[EUR][1000 genomes] |
| rs73495050 | 1.00[EUR][1000 genomes] |
| rs73495054 | 1.00[EUR][1000 genomes] |
| rs73495060 | 1.00[EUR][1000 genomes] |
| rs73496391 | 1.00[EUR][1000 genomes] |
| rs769438 | 1.00[EUR][1000 genomes] |
| rs769439 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ATG2A | Proximal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| ATG2A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TBC1D4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014