SNP Report
Basic Infomation
| Name | rs769439 dbSNP |
|---|---|
| Location | chr:11,64889618 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 54)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11819994 | 1.00[EUR][1000 genomes] |
| rs11824823 | 1.00[EUR][1000 genomes] |
| rs11825104 | 0.83[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs11826724 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11828131 | 1.00[EUR][1000 genomes] |
| rs17145206 | 1.00[EUR][1000 genomes] |
| rs17146681 | 0.92[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17743381 | 0.82[YRI][hapmap] |
| rs17882241 | 1.00[EUR][1000 genomes] |
| rs17883601 | 1.00[EUR][1000 genomes] |
| rs17884528 | 1.00[EUR][1000 genomes] |
| rs17885792 | 1.00[EUR][1000 genomes] |
| rs17886339 | 1.00[EUR][1000 genomes] |
| rs34137954 | 0.87[MKK][hapmap] |
| rs4149823 | 1.00[YRI][hapmap] |
| rs4149824 | 1.00[YRI][hapmap] |
| rs4149828 | 1.00[YRI][hapmap] |
| rs4149839 | 1.00[YRI][hapmap] |
| rs57292990 | 1.00[EUR][1000 genomes] |
| rs57895567 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57983247 | 1.00[EUR][1000 genomes] |
| rs58009266 | 1.00[EUR][1000 genomes] |
| rs58306239 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60034183 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60169759 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60568743 | 1.00[EUR][1000 genomes] |
| rs61136517 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61202604 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61231480 | 1.00[EUR][1000 genomes] |
| rs61746813 | 1.00[EUR][1000 genomes] |
| rs73474770 | 1.00[EUR][1000 genomes] |
| rs73474771 | 1.00[EUR][1000 genomes] |
| rs73474781 | 1.00[EUR][1000 genomes] |
| rs73477004 | 1.00[EUR][1000 genomes] |
| rs73477025 | 1.00[EUR][1000 genomes] |
| rs73477027 | 1.00[EUR][1000 genomes] |
| rs73477209 | 1.00[EUR][1000 genomes] |
| rs73477214 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73477217 | 1.00[AMR][1000 genomes] |
| rs73477223 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73477224 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73477233 | 1.00[EUR][1000 genomes] |
| rs73477237 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73479135 | 1.00[EUR][1000 genomes] |
| rs73480916 | 1.00[EUR][1000 genomes] |
| rs73480917 | 1.00[EUR][1000 genomes] |
| rs73480936 | 1.00[EUR][1000 genomes] |
| rs73480948 | 1.00[EUR][1000 genomes] |
| rs73481122 | 1.00[EUR][1000 genomes] |
| rs73481154 | 1.00[EUR][1000 genomes] |
| rs73495050 | 1.00[EUR][1000 genomes] |
| rs73495054 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73495060 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs769438 | 0.92[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MRPL49 | Proximal transcriptional regulation |
| FAU | Proximal transcriptional regulation |
| ZNHIT2 | Proximal transcriptional regulation |
| RNU4-2 | Distal transcriptional regulation |
| MBP | Distal transcriptional regulation |
| ARF4 | Distal transcriptional regulation |
| MFSD1 | Distal transcriptional regulation |
| ENSG00000240207 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| FAU | RNA binding protein mediated regulation |
| SYVN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014