SNP Report
Basic Infomation
| Name | rs17743381 dbSNP |
|---|---|
| Location | chr:11,64937683 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10895986 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11227137 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17146681 | 0.82[YRI][hapmap] |
| rs3825073 | 0.89[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4149824 | 1.00[YRI][hapmap] |
| rs4149828 | 0.82[YRI][hapmap] |
| rs4149839 | 0.82[YRI][hapmap] |
| rs4647585 | 0.82[YRI][hapmap] |
| rs55646096 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6591177 | 0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7124215 | 0.93[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7128220 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72932851 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs769438 | 0.82[YRI][hapmap] |
| rs769439 | 0.82[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPDYC | Proximal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| HIGD1AP10 | Distal transcriptional regulation |
| ENSG00000222477 | Distal transcriptional regulation |
| SLC22A20 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014