SNP Report
Basic Infomation
| Name | rs73477217 dbSNP |
|---|---|
| Location | chr:11,64901619 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11826724 | 1.00[AMR][1000 genomes] |
| rs17146681 | 1.00[AMR][1000 genomes] |
| rs57895567 | 1.00[AMR][1000 genomes] |
| rs58306239 | 1.00[AMR][1000 genomes] |
| rs60034183 | 1.00[AMR][1000 genomes] |
| rs60169759 | 1.00[AMR][1000 genomes] |
| rs61136517 | 1.00[AMR][1000 genomes] |
| rs73477214 | 1.00[AMR][1000 genomes] |
| rs73477223 | 1.00[AMR][1000 genomes] |
| rs73477224 | 1.00[AMR][1000 genomes] |
| rs73477237 | 1.00[AMR][1000 genomes] |
| rs73495054 | 1.00[AMR][1000 genomes] |
| rs73495060 | 1.00[AMR][1000 genomes] |
| rs769438 | 1.00[AMR][1000 genomes] |
| rs769439 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYVN1 | Proximal transcriptional regulation |
| C19orf24 | Distal transcriptional regulation |
| KPNA1 | Distal transcriptional regulation |
| SUMF2 | Distal transcriptional regulation |
| MEN1 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000222477 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| ENSG00000255058 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| HIGD1AP10 | Distal transcriptional regulation |
| MESDC1 | Distal transcriptional regulation |
| ENSG00000263770 | Distal transcriptional regulation |
| BATF2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014