SNP Report
Basic Infomation
| Name | rs17885792 dbSNP |
|---|---|
| Location | chr:11,64977478 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11819994 | 1.00[EUR][1000 genomes] |
| rs11824855 | 1.00[AMR][1000 genomes] |
| rs11825104 | 1.00[EUR][1000 genomes] |
| rs11826089 | 1.00[AMR][1000 genomes] |
| rs11826724 | 1.00[EUR][1000 genomes] |
| rs11828131 | 1.00[EUR][1000 genomes] |
| rs17145206 | 1.00[EUR][1000 genomes] |
| rs17146681 | 1.00[EUR][1000 genomes] |
| rs17882241 | 1.00[EUR][1000 genomes] |
| rs17883601 | 1.00[EUR][1000 genomes] |
| rs17884528 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17885809 | 1.00[AMR][1000 genomes] |
| rs17886339 | 1.00[EUR][1000 genomes] |
| rs57292990 | 1.00[EUR][1000 genomes] |
| rs57895567 | 1.00[EUR][1000 genomes] |
| rs58306239 | 1.00[EUR][1000 genomes] |
| rs60034183 | 1.00[EUR][1000 genomes] |
| rs60169759 | 1.00[EUR][1000 genomes] |
| rs60568743 | 1.00[EUR][1000 genomes] |
| rs61136517 | 1.00[EUR][1000 genomes] |
| rs61202604 | 1.00[EUR][1000 genomes] |
| rs61231480 | 1.00[EUR][1000 genomes] |
| rs73477004 | 1.00[EUR][1000 genomes] |
| rs73477025 | 1.00[EUR][1000 genomes] |
| rs73477027 | 1.00[EUR][1000 genomes] |
| rs73477209 | 1.00[EUR][1000 genomes] |
| rs73477214 | 1.00[EUR][1000 genomes] |
| rs73477223 | 1.00[EUR][1000 genomes] |
| rs73477224 | 1.00[EUR][1000 genomes] |
| rs73477233 | 1.00[EUR][1000 genomes] |
| rs73479135 | 1.00[EUR][1000 genomes] |
| rs73480916 | 1.00[EUR][1000 genomes] |
| rs73480917 | 1.00[EUR][1000 genomes] |
| rs73480936 | 1.00[EUR][1000 genomes] |
| rs73480948 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73495050 | 1.00[EUR][1000 genomes] |
| rs73495054 | 1.00[EUR][1000 genomes] |
| rs73495060 | 1.00[EUR][1000 genomes] |
| rs769438 | 1.00[EUR][1000 genomes] |
| rs769439 | 1.00[EUR][1000 genomes] |
| rs7927821 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A20 | Proximal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| CAPN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014