SNP Report

Basic Infomation

Name	rs3771171 dbSNP
Location	chr:2,102985950
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 85)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1035130	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10490203	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs10490204	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs11123923	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11123928	0.86[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs11123929	0.81[EUR][1000 genomes]
rs1135354	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11465633	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11678975	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11681718	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11683700	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11693204	0.83[AMR][1000 genomes]
rs11694360	0.86[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs12469506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12470867	0.80[AMR][1000 genomes]
rs12479210	0.82[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12712142	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12905	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12987977	0.89[ASN][1000 genomes]
rs12998521	0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12999364	0.89[ASN][1000 genomes]
rs13001325	0.82[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs13017455	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs13019081	0.86[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1420098	0.89[ASN][1000 genomes]
rs1420101	0.91[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1474309	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs17026974	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17027006	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17027037	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17027060	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17027071	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17027166	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs17027179	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs17027255	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs17027258	0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1882348	0.89[ASN][1000 genomes]
rs2058656	0.81[JPT][hapmap]
rs2080289	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2160202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241116	0.81[CEU][hapmap]
rs2270298	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2287034	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2287035	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2287037	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2293225	0.81[CEU][hapmap]
rs3732125	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3732126	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3732129	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3771150	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs3771156	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3771162	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3771172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771177	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3821203	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3821204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4851005	0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs4851006	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4851011	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4851564	0.80[AMR][1000 genomes]
rs4851569	0.89[ASN][1000 genomes]
rs4851570	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4851582	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4851583	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs4851615	0.81[JPT][hapmap]
rs55645612	0.82[EUR][1000 genomes]
rs55883125	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55927292	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56044378	0.81[EUR][1000 genomes]
rs56166614	0.82[EUR][1000 genomes]
rs56192435	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56224165	0.80[AMR][1000 genomes]
rs56258475	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56331791	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56386507	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6543119	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs66566526	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66919607	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6710885	0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs67723747	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7597017	0.85[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs873022	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs887971	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs887972	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs950880	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
IL18R1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)