SNP Report

Basic Infomation

Name	rs4851005 dbSNP
Location	chr:2,103011552
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 72)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1035130	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10490203	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10490204	0.86[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11123923	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs11123927	0.96[ASN][1000 genomes]
rs11123928	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11123929	0.96[ASN][1000 genomes]
rs1135354	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11465633	0.99[ASN][1000 genomes]
rs11678975	0.96[ASN][1000 genomes]
rs11681718	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11683700	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11694360	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12469506	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12479210	0.83[JPT][hapmap]
rs12712142	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs12905	0.81[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs12998521	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs13001325	0.83[JPT][hapmap]
rs13017455	0.83[JPT][hapmap]
rs13019081	0.80[CHD][hapmap];0.83[JPT][hapmap]
rs1420101	0.83[JPT][hapmap]
rs1474309	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17026974	0.81[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs17027006	0.90[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs17027037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17027060	0.99[ASN][1000 genomes]
rs17027166	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17027179	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17027255	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17027258	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1921622	0.82[CHD][hapmap]
rs2080289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2160202	0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2270298	0.99[ASN][1000 genomes]
rs2287034	0.87[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2287035	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2287037	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs3732125	0.96[ASN][1000 genomes]
rs3732126	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.96[ASN][1000 genomes]
rs3732129	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3771150	0.87[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3771156	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3771162	0.99[ASN][1000 genomes]
rs3771171	0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs3771172	0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs3771177	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3821203	0.99[ASN][1000 genomes]
rs3821204	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4140785	0.86[ASN][1000 genomes]
rs4851006	0.99[ASN][1000 genomes]
rs4851011	0.87[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4851570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4851582	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4851583	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4851585	0.89[ASN][1000 genomes]
rs55645612	0.96[ASN][1000 genomes]
rs55883125	0.99[ASN][1000 genomes]
rs56043441	0.86[ASN][1000 genomes]
rs56044378	0.96[ASN][1000 genomes]
rs56166614	0.96[ASN][1000 genomes]
rs56258475	0.99[ASN][1000 genomes]
rs56331791	0.96[ASN][1000 genomes]
rs6543119	0.83[JPT][hapmap]
rs66566526	0.96[ASN][1000 genomes]
rs66919607	0.99[ASN][1000 genomes]
rs6710885	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs7597017	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs873022	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs887971	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs887972	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs950880	0.83[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
IL18R1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)