SNP Report
Basic Infomation
| Name | rs1420101 dbSNP |
|---|---|
| Location | chr:2,102957716 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 63)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1035130 | 0.91[CEU][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap] |
| rs10490203 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs10490204 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs11123923 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11123928 | 0.83[JPT][hapmap] |
| rs1135354 | 0.91[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap] |
| rs11681718 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs11683700 | 0.90[CEU][hapmap] |
| rs11693204 | 0.81[ASN][1000 genomes] |
| rs11694360 | 0.83[JPT][hapmap] |
| rs12469506 | 0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs12470864 | 0.92[ASN][1000 genomes] |
| rs12479210 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12712142 | 1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12905 | 0.91[CEU][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12987977 | 0.83[ASN][1000 genomes] |
| rs12998521 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs12999364 | 0.83[ASN][1000 genomes] |
| rs13001325 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13001714 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13017455 | 0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13019081 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13020553 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1420098 | 0.82[ASN][1000 genomes] |
| rs1420104 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1474309 | 0.83[JPT][hapmap] |
| rs17026974 | 0.91[CEU][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17027006 | 0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17027037 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs17027166 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs17027179 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs17027255 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs17027258 | 0.91[CEU][hapmap];0.82[JPT][hapmap] |
| rs1882348 | 0.82[ASN][1000 genomes] |
| rs1921622 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2080289 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs2160202 | 0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap] |
| rs2287034 | 0.91[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap] |
| rs2287035 | 0.91[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap] |
| rs2287037 | 0.80[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs3732126 | 0.91[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap] |
| rs3732129 | 0.91[CEU][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs3771150 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs3771156 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs3771171 | 0.91[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap] |
| rs3771172 | 0.91[CEU][hapmap];0.82[CHB][hapmap] |
| rs3771177 | 0.91[CEU][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs3821204 | 0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4851005 | 0.83[JPT][hapmap] |
| rs4851011 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs4851569 | 0.82[ASN][1000 genomes] |
| rs4851570 | 0.91[CEU][hapmap];0.83[JPT][hapmap] |
| rs4851582 | 0.91[CEU][hapmap];0.82[JPT][hapmap] |
| rs4851583 | 0.83[JPT][hapmap] |
| rs55927292 | 0.83[ASN][1000 genomes] |
| rs56192435 | 0.84[ASN][1000 genomes] |
| rs6543119 | 0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6710885 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs7597017 | 0.83[JPT][hapmap] |
| rs873022 | 0.91[CEU][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs887971 | 0.86[CEU][hapmap];0.83[JPT][hapmap] |
| rs887972 | 0.86[CEU][hapmap];0.83[JPT][hapmap] |
| rs950880 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL1 | Distal transcriptional regulation |
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014