SNP Report

Basic Infomation

Name	rs1420104 dbSNP
Location	chr:2,102948470
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11123923	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11693204	0.83[ASN][1000 genomes]
rs12469506	0.85[ASN][1000 genomes]
rs12470864	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12470867	0.81[ASN][1000 genomes]
rs12479210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712142	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12905	0.85[ASN][1000 genomes]
rs12987977	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12998521	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12999364	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13001325	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13001714	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13017455	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13019081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020553	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1420098	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1420101	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17026974	0.87[ASN][1000 genomes]
rs17027006	0.85[ASN][1000 genomes]
rs1882348	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1921622	0.83[ASN][1000 genomes]
rs2287037	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3732129	0.87[ASN][1000 genomes]
rs3771177	0.87[ASN][1000 genomes]
rs3821204	0.86[ASN][1000 genomes]
rs4851569	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55927292	0.85[ASN][1000 genomes]
rs56192435	0.87[ASN][1000 genomes]
rs56224165	0.80[ASN][1000 genomes]
rs6543119	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6710885	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs873022	0.87[ASN][1000 genomes]
rs950880	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1RL1	RNA binding protein mediated regulation
IL18R1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)