SNP Report

Basic Infomation

Name	rs6710885 dbSNP
Location	chr:2,102977537
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 82)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10192036	0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs10192157	0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs10204137	0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs10206753	0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs1035130	0.82[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap]
rs10490203	0.91[JPT][hapmap]
rs10490204	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs11123923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11123928	0.91[JPT][hapmap]
rs1135354	0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs11681718	0.91[JPT][hapmap]
rs11683700	0.84[JPT][hapmap]
rs11688559	0.83[AFR][1000 genomes]
rs11688568	0.82[AFR][1000 genomes]
rs11688573	0.82[AFR][1000 genomes]
rs11689730	0.81[AFR][1000 genomes]
rs11694360	0.91[JPT][hapmap]
rs11695627	0.84[AFR][1000 genomes]
rs12469506	0.82[CHB][hapmap]
rs12479210	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12712142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12905	0.83[CHD][hapmap]
rs12987977	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12998521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12999364	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13001325	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs13001714	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13017455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13019081	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.87[MKK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13020553	0.81[ASN][1000 genomes]
rs13424006	0.82[YRI][hapmap]
rs1420098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1420101	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs1420104	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1474309	0.91[JPT][hapmap]
rs17026974	0.83[CHD][hapmap]
rs17027006	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs17027037	0.91[JPT][hapmap]
rs17027166	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs17027179	0.91[JPT][hapmap]
rs17027255	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs17027258	0.90[JPT][hapmap]
rs1861245	0.83[YRI][hapmap]
rs1882348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1921622	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs2080289	0.91[JPT][hapmap]
rs2160202	0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2287034	0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs2287035	0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs2287037	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732126	0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs3771150	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs3771156	0.91[JPT][hapmap]
rs3771171	0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs3771172	0.82[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs3821204	0.82[CHB][hapmap]
rs4851005	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs4851011	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs4851565	0.84[AFR][1000 genomes]
rs4851566	0.84[AFR][1000 genomes]
rs4851569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4851570	0.91[JPT][hapmap]
rs4851582	0.90[JPT][hapmap]
rs4851583	0.91[JPT][hapmap]
rs4988955	0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs4988956	0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs4988957	0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap]
rs4988958	0.87[ASW][hapmap];0.83[YRI][hapmap]
rs56386507	0.86[ASN][1000 genomes]
rs6543119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6749114	0.83[YRI][hapmap]
rs6751967	0.83[YRI][hapmap]
rs67723747	0.84[ASN][1000 genomes]
rs7558339	0.84[AFR][1000 genomes]
rs7597017	0.91[JPT][hapmap]
rs7608638	0.84[AFR][1000 genomes]
rs887971	0.91[JPT][hapmap]
rs887972	0.91[JPT][hapmap]
rs950880	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9807962	0.84[AFR][1000 genomes]
rs9807989	0.82[AFR][1000 genomes]
rs9808453	0.84[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL18R1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)