SNP Report
Basic Infomation
| Name | rs12905 dbSNP |
|---|---|
| Location | chr:2,102960007 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 64)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1035130 | 1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap] |
| rs10490203 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
| rs10490204 | 1.00[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap] |
| rs11123923 | 0.81[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs11123928 | 0.86[CEU][hapmap];0.86[JPT][hapmap] |
| rs1135354 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap] |
| rs11679889 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs11681718 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
| rs11683700 | 1.00[CEU][hapmap];0.81[CHB][hapmap] |
| rs11693204 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11694360 | 0.86[CEU][hapmap];0.86[JPT][hapmap] |
| rs12469506 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12470867 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12479210 | 0.87[CEU][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12712142 | 0.81[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs12998521 | 0.81[CHD][hapmap] |
| rs13001325 | 0.86[CEU][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs13001714 | 0.86[ASN][1000 genomes] |
| rs13017455 | 0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs13019081 | 0.87[CEU][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs13020553 | 0.81[ASN][1000 genomes] |
| rs1420101 | 0.91[CEU][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1420104 | 0.85[ASN][1000 genomes] |
| rs1474309 | 0.86[JPT][hapmap] |
| rs17026974 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17027006 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17027037 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap] |
| rs17027166 | 1.00[CEU][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap] |
| rs17027179 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
| rs17027255 | 1.00[CEU][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap] |
| rs17027258 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
| rs2080289 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap] |
| rs2160202 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2241116 | 0.86[MEX][hapmap] |
| rs2287034 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap] |
| rs2287035 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap] |
| rs2287037 | 0.81[CHD][hapmap] |
| rs2293225 | 0.86[MEX][hapmap] |
| rs3732126 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap] |
| rs3732129 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3771150 | 1.00[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap] |
| rs3771156 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
| rs3771171 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3771172 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3771177 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3821204 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4851005 | 0.81[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap] |
| rs4851011 | 1.00[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap] |
| rs4851564 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4851570 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap] |
| rs4851582 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
| rs4851583 | 0.86[JPT][hapmap] |
| rs55927292 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56192435 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56224165 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56386507 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6543119 | 0.87[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs6710885 | 0.83[CHD][hapmap] |
| rs67723747 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7597017 | 0.86[CEU][hapmap];0.86[JPT][hapmap] |
| rs873022 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs887971 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
| rs887972 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
| rs950880 | 0.87[CEU][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL1 | Proximal transcriptional regulation |
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| IL18R1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014