SNP Report
Basic Infomation
| Name | rs55927292 dbSNP |
|---|---|
| Location | chr:2,102964861 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11123923 | 0.88[ASN][1000 genomes] |
| rs11693204 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12469506 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12470867 | 0.87[ASN][1000 genomes] |
| rs12479210 | 0.85[ASN][1000 genomes] |
| rs12712142 | 0.89[ASN][1000 genomes] |
| rs12905 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13001325 | 0.81[ASN][1000 genomes] |
| rs13001714 | 0.89[ASN][1000 genomes] |
| rs13017455 | 0.89[ASN][1000 genomes] |
| rs13019081 | 0.85[ASN][1000 genomes] |
| rs13020553 | 0.81[ASN][1000 genomes] |
| rs1420101 | 0.83[ASN][1000 genomes] |
| rs1420104 | 0.85[ASN][1000 genomes] |
| rs17026974 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17027006 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2160202 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3732129 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3771171 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3771172 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3771177 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3821204 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4851564 | 0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs56192435 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56224165 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56386507 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6543119 | 0.90[ASN][1000 genomes] |
| rs67723747 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs873022 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs950880 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18R1 | Distal transcriptional regulation |
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014