SNP Report

Basic Infomation

Name	rs56386507 dbSNP
Location	chr:2,102971165
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 66)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1035130	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10490203	0.81[EUR][1000 genomes]
rs10490204	0.82[EUR][1000 genomes]
rs11123928	0.81[EUR][1000 genomes]
rs11123929	0.81[EUR][1000 genomes]
rs1135354	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11465633	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11678975	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11681718	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11683700	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11693204	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11694360	0.81[EUR][1000 genomes]
rs12469506	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12470867	0.80[AMR][1000 genomes]
rs12905	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12987977	0.86[ASN][1000 genomes]
rs12998521	0.86[ASN][1000 genomes]
rs12999364	0.86[ASN][1000 genomes]
rs1420098	0.86[ASN][1000 genomes]
rs17026974	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17027006	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17027037	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17027060	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17027071	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17027166	0.82[EUR][1000 genomes]
rs17027179	0.81[EUR][1000 genomes]
rs1882348	0.86[ASN][1000 genomes]
rs2080289	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2160202	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2270298	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2287034	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2287035	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2287037	0.86[ASN][1000 genomes]
rs3732125	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3732126	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3732129	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3771150	0.81[EUR][1000 genomes]
rs3771156	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3771162	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3771171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3771172	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3771177	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3821203	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3821204	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4851006	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4851564	0.80[AMR][1000 genomes]
rs4851569	0.86[ASN][1000 genomes]
rs4851570	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4851582	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4851583	0.81[EUR][1000 genomes]
rs55645612	0.82[EUR][1000 genomes]
rs55883125	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55927292	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56044378	0.81[EUR][1000 genomes]
rs56166614	0.82[EUR][1000 genomes]
rs56192435	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56224165	0.80[AMR][1000 genomes]
rs56258475	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56331791	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6543119	0.81[ASN][1000 genomes]
rs66566526	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66919607	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6710885	0.86[ASN][1000 genomes]
rs67723747	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7597017	0.81[EUR][1000 genomes]
rs873022	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL18R1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)