SNP Report
Basic Infomation
| Name | rs12987977 dbSNP |
|---|---|
| Location | chr:2,102975336 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11123923 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12479210 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12712142 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12998521 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12999364 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13001325 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13001714 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13017455 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13019081 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13020553 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1420098 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1420101 | 0.83[ASN][1000 genomes] |
| rs1420104 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1882348 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2160202 | 0.89[ASN][1000 genomes] |
| rs2287037 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3771171 | 0.89[ASN][1000 genomes] |
| rs3771172 | 0.89[ASN][1000 genomes] |
| rs4851569 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56386507 | 0.86[ASN][1000 genomes] |
| rs6543119 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6710885 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67723747 | 0.84[ASN][1000 genomes] |
| rs950880 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18R1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014