SNP Report

Basic Infomation

Name	rs13020553 dbSNP
Location	chr:2,102931826
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11123923	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11693204	0.87[ASN][1000 genomes]
rs12469506	0.81[ASN][1000 genomes]
rs12470864	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12470867	0.85[ASN][1000 genomes]
rs12479210	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12712142	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12905	0.81[ASN][1000 genomes]
rs12987977	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12998521	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12999364	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13001325	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13001714	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13017455	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13019081	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1420101	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1420104	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17026974	0.83[ASN][1000 genomes]
rs17027006	0.81[ASN][1000 genomes]
rs2287037	0.81[ASN][1000 genomes]
rs3732129	0.83[ASN][1000 genomes]
rs3771177	0.83[ASN][1000 genomes]
rs3821204	0.83[ASN][1000 genomes]
rs4851564	0.83[ASN][1000 genomes]
rs55927292	0.81[ASN][1000 genomes]
rs56192435	0.83[ASN][1000 genomes]
rs56224165	0.84[ASN][1000 genomes]
rs6543119	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6710885	0.81[ASN][1000 genomes]
rs873022	0.83[ASN][1000 genomes]
rs950880	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1RL1	RNA binding protein mediated regulation
IL18R1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)