SNP Report
Basic Infomation
| Name | rs12470864 dbSNP |
|---|---|
| Location | chr:2,102926362 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11123923 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11693204 | 0.85[ASN][1000 genomes] |
| rs12470867 | 0.87[ASN][1000 genomes] |
| rs12479210 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12712142 | 0.90[ASN][1000 genomes] |
| rs13001325 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13001714 | 0.90[ASN][1000 genomes] |
| rs13017455 | 0.90[ASN][1000 genomes] |
| rs13019081 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13020553 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1420101 | 0.92[ASN][1000 genomes] |
| rs1420104 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17026974 | 0.81[ASN][1000 genomes] |
| rs3732129 | 0.81[ASN][1000 genomes] |
| rs3771177 | 0.81[ASN][1000 genomes] |
| rs3821204 | 0.81[ASN][1000 genomes] |
| rs4851564 | 0.85[ASN][1000 genomes] |
| rs56192435 | 0.81[ASN][1000 genomes] |
| rs56224165 | 0.86[ASN][1000 genomes] |
| rs6543119 | 0.89[ASN][1000 genomes] |
| rs873022 | 0.81[ASN][1000 genomes] |
| rs950880 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL1 | Proximal transcriptional regulation |
| IL18R1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014