SNP Report

Basic Infomation

Name	rs56224165 dbSNP
Location	chr:2,102925223
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11679889	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11693204	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12469506	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12470864	0.86[ASN][1000 genomes]
rs12470867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12479210	0.80[ASN][1000 genomes]
rs12905	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13001325	0.84[ASN][1000 genomes]
rs13019081	0.80[ASN][1000 genomes]
rs13020553	0.84[ASN][1000 genomes]
rs1420104	0.80[ASN][1000 genomes]
rs17026974	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17027006	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2160202	0.80[AMR][1000 genomes]
rs3732129	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3771171	0.80[AMR][1000 genomes]
rs3771172	0.80[AMR][1000 genomes]
rs3771177	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3821204	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4851564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55927292	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56192435	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56386507	0.80[AMR][1000 genomes]
rs873022	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs950880	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1RL1	Proximal transcriptional regulation
IL18R1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)