SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1035130	0.94[MEX][hapmap];0.81[TSI][hapmap]
rs10490204	0.82[MEX][hapmap];0.89[MKK][hapmap];0.90[YRI][hapmap]
rs1135354	0.94[MEX][hapmap];0.81[TSI][hapmap]
rs11681718	0.90[YRI][hapmap]
rs11692304	0.88[JPT][hapmap]
rs12905	0.86[MEX][hapmap]
rs17026974	0.87[MEX][hapmap]
rs17027006	0.87[MEX][hapmap]
rs17027166	0.82[MEX][hapmap]
rs17027255	0.82[MEX][hapmap]
rs2241116	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2287034	0.94[MEX][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap]
rs2287035	0.93[MEX][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs3732126	0.94[MEX][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs3755272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3771150	0.82[MEX][hapmap];0.90[YRI][hapmap]
rs3771156	0.90[YRI][hapmap]
rs3771157	0.87[CHD][hapmap];1.00[LWK][hapmap]
rs3771171	0.81[CEU][hapmap]
rs4851011	0.82[MEX][hapmap];0.82[YRI][hapmap]
rs4851574	0.87[CHD][hapmap];1.00[LWK][hapmap]
rs4851604	0.88[JPT][hapmap]
rs887972	0.89[MKK][hapmap];0.90[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
IL18RAP	Proximal transcriptional regulation
IL18RAP	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)