SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10203707	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207579	0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11692304	0.83[ASW][hapmap];0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12712154	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523200	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241116	0.88[JPT][hapmap]
rs2293225	0.88[JPT][hapmap]
rs2310303	0.85[GIH][hapmap]
rs4851594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4851596	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4851602	0.82[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs4851608	0.82[AFR][1000 genomes]
rs4851615	0.85[ASW][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap]
rs6543146	0.85[GIH][hapmap]
rs6719296	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737231	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7605606	0.89[JPT][hapmap];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC9A4	Proximal transcriptional regulation
SLC9A2	Distal transcriptional regulation
SLC9A4	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)