SNP Report
Basic Infomation
| Name | rs10207579 dbSNP |
|---|---|
| Location | chr:2,103103289 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10175045 | 0.82[JPT][hapmap] |
| rs10203707 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1030026 | 0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs11123934 | 0.82[JPT][hapmap] |
| rs11692304 | 0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12712154 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1403548 | 0.81[JPT][hapmap] |
| rs1523198 | 0.82[JPT][hapmap] |
| rs1523200 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2072508 | 0.80[ASN][1000 genomes] |
| rs2075193 | 0.82[JPT][hapmap] |
| rs2140316 | 0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2310303 | 0.84[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes] |
| rs4851594 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4851596 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851602 | 0.85[GIH][hapmap] |
| rs4851604 | 0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4851615 | 0.81[GIH][hapmap];0.85[MEX][hapmap] |
| rs6543146 | 0.84[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.85[ASN][1000 genomes] |
| rs6543150 | 0.82[JPT][hapmap] |
| rs6543154 | 0.82[JPT][hapmap] |
| rs6543155 | 0.81[JPT][hapmap] |
| rs6719296 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs737231 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7566063 | 0.82[JPT][hapmap] |
| rs7591872 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A2 | Distal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014