SNP Report
Basic Infomation
| Name | rs7591872 dbSNP |
|---|---|
| Location | chr:2,103112641 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 62)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10172588 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10175045 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10207579 | 0.82[JPT][hapmap] |
| rs1030026 | 0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11123934 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11682754 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11687071 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11690932 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12712153 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12987295 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12995030 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13019784 | 0.87[GIH][hapmap] |
| rs1403548 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1403550 | 0.84[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap] |
| rs1403551 | 0.84[GIH][hapmap] |
| rs1523198 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1523199 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1523201 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2072508 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2072509 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2075187 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2075188 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2075189 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2075190 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2075191 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2075192 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2075193 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2140316 | 0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2310303 | 0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2310304 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4851012 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4851013 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4851014 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4851015 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4851016 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4851017 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap] |
| rs4851598 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4851599 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4851600 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4851605 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4851606 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6543146 | 0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6543150 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6543153 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6543154 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6543155 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6543157 | 0.84[EUR][1000 genomes] |
| rs6705272 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6708949 | 0.89[GIH][hapmap];0.87[MEX][hapmap] |
| rs6713906 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6724109 | 0.84[GIH][hapmap];0.81[MEX][hapmap] |
| rs6728288 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6741235 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6741627 | 0.94[EUR][1000 genomes] |
| rs6750851 | 0.84[GIH][hapmap] |
| rs7566063 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7567885 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7568122 | 0.83[EUR][1000 genomes] |
| rs7573566 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7591101 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7591878 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7593935 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TMEM66 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014